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Mouse Genomics Resource Laboratory

Research Organization of Information and System
National Institute of Genetics

Reference List

1) Koide T, Yoshino M, Niwa M, Ishiura M, Shiroishi T, Moriwaki K: The amplified long genomic sequence (ALGS) located in the centromeric regions of mouse chromosomes.
Genomics, 13, 1186-1191, 1992.
[PMID: 1505952] [DOI: 10.1016/0888-7543(92)90036-r]

2) Koide T, Moriwaki K, Uchida K, Mita A, Sagai T, Yonekawa H, Katoh H, Miyashita N, Tsuchiya K, Nielsen TJ, Shiroishi T: A new inbred strain JF1 established from Japanese fancy mouse carrying the classic piebald allele.
Mammalian Genome, 9, 15-19, 1998.
[PMID: 9434939] [DOI: 10.1007/s003359900672]

3) Koide T, Moriwaki K, Ikeda K, Niki H, Shiroishi T: Multi-phenotype behavioral characterization of inbred strains derived from wild stocks of Mus musculus.
Mammalian Genome 11, 664-670, 2000
[PMID: 10920237] [DOI: 10.1007/s003350010129]

4) Furuse T, Blizard DA, Moriwaki K, Miura Y, Yagasaki K, Shiroishi T, Koide T: Genetic diversity underlying capsaicin intake in the Mishima battery of mouse strains.
Brain Research Bulletin 57, 49-55, 2002.
[PMID: 11827737] [DOI: 10.1016/s0361-9230(01)00636-0]

5) Furuse T, Takano-Shimizu T, Moriwaki K, Shiroishi T, Koide T: QTL analyses of spontaneous locomotor activity by using mouse strains from Mishima battery.
Mammalian Genome 13, 411-415, 2002.
[PMID: 12226705] [DOI: 10.1007/s00335-002-2168-5]

6) Ogasawara M, Imanishi T, Moriwaki K, Gaudieri S, Tsuda H, Hashimoto H, Shiroishi T, Gojobori T, Koide T: Length variation of CAG/CAA triplet repeats in 50 genes among 16 inbred mouse strains.
Gene, 349, 107-119, 2005.
[PMID: 15777662] [DOI: 10.1016/j.gene.2004.11.050]

7) Esumi S, Kakazu N, Taguchi Y, Hirayama T, Sasaki A, Hirabayashi T, Koide T, Kitsukawa T, Hamada S, Yagi T: Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons.
Nature Genetics, 37, 171-176, 2005.
[PMID: 15640798] [DOI: 10.1038/ng1500]

8) Taguchi Y, Koide T, Shiroishi T, Yagi T: Molecular evolution of Cadherin-related neuronal receptor/protocadherin α (CNR/Pcdhα) gene cluster in Mus musculus subspecies.
Molecular Biology and Evolution 22, 1433-1443, 2005.
[PMID: 15758202] [DOI: 10.1093/molbev/msi130]

9) Takahashi A, Kato K, Makino J, Shiroishi T, Koide T: Multivariate analysis of temporal descriptions of open-field behavior in wild derived mouse strains.
Behavior Genetics, 36, 763-774, 2006.
[PMID: 16402282] [DOI: 10.1007/s10519-005-9038-3]

10) Liu Y-H, Takahashi A, Kitano T, Koide T, Shiroishi T, Moriwaki K, Saitou N: Mosaic genealogy of the Mus musculus genome revealed by 21 nuclear genes from its three subspecies.
Genes and Genetic Systems, 83(1):77-88, 2008.
[PMID: 18379136] [DOI: 10.1266/ggs.83.77]

11) Shigeta Y, Kasai S, Han W, Hata H, Nishi A, Takamatsu Y, Hagino Y, Yamamoto H, Koide T, Shiroishi T, Kasai K, Tsunashima K, Kato N, Ikeda K: Association of morphine-induced antinociception with variations in the 5' flanking and 3' untranslated regions of the μ opioid receptor gene in 10 inbred mouse strains.
Pharmacogenetics and Genomics, 18:927-936, 2008.
[PMID: 18854775] [DOI: 10.1097/FPC.0b013e32830d0b9e]

12) Dowse H, Umemori J, Koide T: Ultradian Components in the Locomotor Activity Rhythms of the Genetically Normal Mouse, Mus musculus.
Journal of Experimental Biology 213:1788-1795, 2010.
[PMID: 20435830] [DOI: 10.1242/jeb.038877]

13) Koide T, Ikeda K, Ogasawara M, Shiroishi T, Moriwaki K, Takahashi A.: A new twist on behavioral genetics by incorporating wild-derived mouse strains.
Experimental Animals 60: 347-354, 2011.(Review)
[PMID: 21791874] [DOI: 10.1538/expanim.60.347]

14) Sugimoto H, Okabe S, Kato M, Koshida N, Shiroishi T, Mogi K, Kikusui T, Koide T: A role for strain differences in waveforms of ultrasonic vocalizations during male–female interaction.
PLoS ONE 6: e22093, 2011.
[PMID: 21818297] [PMCID: PMC3144874] [DOI: 10.1371/journal.pone.0022093]

15) Koide T, Goto T, Takano-Shimizu T: Genomic mixing to elucidate the genetic system of complex traits.
Experimental Animals 61: 503-509, 2012. (Review)
[PMID: 23095813] [DOI: 10.1538/expanim.61.503]

16) Goto T, Tanave A, Moriwaki K, Shiroishi T, Koide T: Selection for reluctance to avoid humans during the domestication of mice.
Genes, Brain, and Behavior 12, 760-770, 2013.
[PMID: 24034605] [PMCID: PMC4282115] [DOI: 10.1111/gbb.12088]

17) Takahashi A, Shiroishi T, Koide T: Genetic mapping of escalated aggression in wild-derived mouse strain MSM/Ms: association with serotonin-related genes.
Frontiers in Neuroscience Volume8, Article156, 2014.
[PMID: 24966813] [PMCID: PMC4052355] [DOI: 10.3389/fnins.2014.00156]

18) Takahashi A, Sugimoto H, Kato S, Shiroishi T, Koide T: Mapping of Genetic Factors That Elicit Intermale Aggressive Behavior on Mouse Chromosome 15: Intruder Effects and the Complex Genetic Basis.
PLoS One. 10(9):e0137764. 2015.
[PMID: 26389588] [PMCID: PMC4577130] [DOI: 10.1371/journal.pone.0137764]

19) Matsumoto Y, Goto T, Nishino J, Nakaoka H, Tanave A, Takano-Shimizu T, Mott RF, Koide T: Selective breeding and selection mapping using a novel wild-derived heterogeneous stock of mice revealed two closely-linked loci for tameness.
Scientific Reports, 7: 4607, 2017.
[PMID: 28676693] [PMCID: PMC5496859] [DOI: 10.1038/s41598-017-04869-1]

20) Tanave A, Imai Y, Koide T: Nested retrotransposition in the East Asian mouse genome causes the classical nonagouti mutation.
Communications Biology 2: 283, 2019
[PMID: 31396563] [PMCID: PMC6677723] [DOI: 10.1038/s42003-019-0539-7]

21) Tanave A, Koide T: A role for the rare endogenous retrovirus β4 in development of Japanese fancy mice.
Communications Biology. 3: 53, 2020.
[PMID: 32020010] [PMCID: PMC7000388] [DOI: 10.1038/s42003-020-0781-z]